Index

_

_normalised_angles (ProteinNetRecord attribute)

_static (ProteinNetMap attribute)

A

astral_id (ProteinNetRecord attribute)

C

calc_chi1() (in module proteinnetpy.maths) calc_dihedral() (in module proteinnetpy.maths) calculate_backbone_angles() (ProteinNetRecord method) casp_id (ProteinNetRecord attribute)

chi (ProteinNetMutator attribute) (ProteinNetRecord attribute) chi_mask (ProteinNetRecord attribute) combine_filters() (in module proteinnetpy.data)

D

data (ProteinNetDataset attribute) (ProteinNetMap attribute)

distance_matrix() (ProteinNetRecord method)

E

encoding (ProteinNetMutator attribute)

enumerate_sequence() (ProteinNetRecord method) evolutionary (ProteinNetRecord attribute)

F

fetch_record() (in module proteinnetpy.parser) filter_errors (ProteinNetMap attribute) filter_func (ProteinNetDataset attribute)

func (LabeledFunction attribute) (ProteinNetMap attribute) (ProteinNetMutator attribute)

G

generate() (ProteinNetMap method)

get_one_hot_sequence() (ProteinNetRecord method)

I

id (ProteinNetRecord attribute)

info_content (ProteinNetRecord attribute)

K

kwargs (ProteinNetMutator attribute)

L

LabeledFunction (class in proteinnetpy.data)

M

make_id_filter() (in module proteinnetpy.data) make_length_filter() (in module proteinnetpy.data) make_mask_filter() (in module proteinnetpy.data) make_nan_filter() (in module proteinnetpy.data) mask (ProteinNetRecord attribute) module proteinnetpy.data proteinnetpy.maths proteinnetpy.mutation proteinnetpy.parser proteinnetpy.record

mutator (ProteinNetMutator attribute)

N

normalise_angles() (ProteinNetRecord method)

O

output_shapes (LabeledFunction attribute)

output_types (LabeledFunction attribute)

P

parser_args (ProteinNetDataset attribute) path (ProteinNetDataset attribute) pdb_chain (ProteinNetRecord attribute) pdb_chain_number (ProteinNetRecord attribute) pdb_id (ProteinNetRecord attribute) per_position_mutator() (in module proteinnetpy.mutation) phi (ProteinNetMutator attribute) preload (ProteinNetDataset attribute) primary (ProteinNetRecord attribute) primary_ind (ProteinNetRecord attribute) profile_filter() (in module proteinnetpy.data) profiles (ProteinNetRecord attribute) ProteinNetDataset (class in proteinnetpy.data)

ProteinNetMap (class in proteinnetpy.data) ProteinNetMutator (class in proteinnetpy.mutation) proteinnetpy.data module proteinnetpy.maths module proteinnetpy.mutation module proteinnetpy.parser module proteinnetpy.record module ProteinNetRecord (class in proteinnetpy.record) psi (ProteinNetMutator attribute)

R

rama (ProteinNetRecord attribute) rama_mask (ProteinNetRecord attribute)

record_class (ProteinNetRecord attribute) record_parser() (in module proteinnetpy.parser)

S

sample_deleterious() (in module proteinnetpy.mutation) sample_neutral() (in module proteinnetpy.mutation) secondary (ProteinNetRecord attribute) sequence_mutator() (in module proteinnetpy.mutation)

softmax_sample() (in module proteinnetpy.maths) softmin_sample() (in module proteinnetpy.maths) source (ProteinNetRecord attribute) split (ProteinNetRecord attribute)

T

tertiary (ProteinNetRecord attribute)

W

weights (ProteinNetMutator attribute)

wildtype (ProteinNetMutator attribute)